Hi Ranjan,
These interfaces were my fault. I went ahead and wrote them all one day
after there had been some discussion on the list. The embl/genbank
parsers don't construct these objects. I don't know if the ensembl
bridge does either. Thomas?
Matthew
Ranjan.George wrote:
>
> Hi All,
>
> Am fairly new to this forum, but have been a regular reader of it and have
> been looking at BioJava for the past few months.
>
> Our requirement is to display the possible Splice Variants of a Gene. I
> have noticed that there is
> a SpliceVariant interface and also coupla other interfaces like Gene/Exon
> which all contribute to being
> Features of a Sequence.
>
> However I don't see any of these actually being used when I do a features()
> on a Sequence.
> The iterator only returns me a SimpleStrandedFeature(). Am I missing
> something or is the Feature Hierarchy still at an early stage and is just
> evolving?
>
>
>
> Regards,
>
> Ranjan George
> i labs SAGA Bio-informatics
> Phone : 91-040-3352900/2 Ext.1006
> Fax : 91-040-3351522
> Email : [EMAIL PROTECTED]
> http://www.i-labs.ws
>
>
>
_______________________________________________
Biojava-l mailing list - [EMAIL PROTECTED]
http://biojava.org/mailman/listinfo/biojava-l
