Hi - I have tested and checked in modifications to the Circular API. Notable changes:
1) It works with the new location schema 2) LocationTools can deal with CircularLocations 3) A new hidden class CircularLocationTools deals with most of the ugliness 4) CicularSequence is deprecated in favour of the CircularView wrapper 5) Circular view can contain locations where the min is greater than the max as long as the location is circular. (This allows overlaps of the origin). 6) LocationTools has a static method for generating CircularLocations 7) CircLocTest has been updated and gives sensible results 8) Locations that overlap the origin are implented as a CompoundLocation wrapped in a CircularLocation. This allows LocationTools to efficiently handle Boolean operations. The only downside is that a location that overlaps the origin is nonContiguous. I think this is a minor issue, you could even argue that it is non-contiguous! A small price to pay for the ease of boolean operations. Ps this was my first adventure in CVS commits so let me know if I broke anything. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Mark Schreiber Ph: 64 3 4797875 Rm 218 email [EMAIL PROTECTED] Department of Biochemistry email [EMAIL PROTECTED] University of Otago PO Box 56 Dunedin New Zealand ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
