On Wed, Oct 17, 2001 at 10:54:21AM +0100, Matthew Pocock wrote: > > - AllSymbolsAlphabet has been removed. I know some > > people (Matthew?) find this very useful, so I should > > probably write a replacement. > > > Does this one cause you problems? I used to find it usefull for reading > in fasta files with arbitrary single char encodings for things like HMM > alignments. Nowadays, I tend to just build a parser from the state > alphabet of the HMM anyway, so everything works out fine without it.
It's not a problem -- it's just that because the alphabet and SymbolParser were (by necessity) fairly intimately coupled, it needed a re-write. I didn't think it was necessary for demoing the patch, but I will re-write it before checking anything in. Thomas. _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
