Biojava, I solved the problem that I mentioned previously where the Genbank and Swissprot flat file parsers utilized one SimpleAnnotation object to hold all the references information about a sequence. The problem is that there is no way to relate the title and authors values back to the parent references.
To solve the problem, I stored all the reference information in a separate SimpleAnnotation and added it to the root annotation. It states in the biojava docs that Annotations may contain keys that have Annotations as values to model hierarchical data. For Genbank, the REFERENCE key corresponds to an Annotation or an array of Annotations with the child REFERENCE keys (i.e. AUTHORS, TITLE, etc.) stored in the child Annotation. The same model exists for the Swissprot RN key. I had to make changes to the SwissprotProcessor.java and GenbankProcessor.java files. What do you think??? Ron Kuhn _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
