Dear Companions:
I've tried to install biojava programs with
biojava-1.11.jar,
bytecode-0.90.jar,
xerces.jar
file from the biojava download site.
After setting the path,
I've tried to compile a sample program
as is introducd in the installation page.
But some errors occurs.
Could you recommend how to come this problem over?
Best wishes,
Chonseok Hyun
PS: attached the set up informations and errors occurred.
(You may have unrecognizabe characters of Korean. That's not important!)
T. 82-16-541-5807
===================================================================
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C:\java\sampledir\BioJava\demos>echo %classpath%
.;C:\j2sdk1.4\lib\servlet\servlet-2_3-fcs-classfiles.zip;C:\j2sdk1.4\lib\biojava
\biojava-1.11.jar;C:\j2sdk1.4\lib\biojava\bytecode-0.90.jar;C:\j2sdk1.4\lib\bioj
ava\xerces.jar
C:\java\sampledir\BioJava\demos>dir
C 드라이브의 볼륨에는 이름이 없습니다.
볼륨 일련 번호: F830-7784
C:\java\sampledir\BioJava\demos 디렉터리
2001-12-05 01:12a <DIR> .
2001-12-05 01:12a <DIR> ..
2001-12-05 01:12a <DIR> BioCorba
2001-12-05 01:12a <DIR> CircLocTest
2001-12-05 01:12a <DIR> das
2001-12-05 01:12a <DIR> dist
2001-12-05 01:12a <DIR> dp
2001-12-05 01:12a <DIR> eventbasedparsing
2001-12-05 01:12a <DIR> files
2001-12-05 01:12a <DIR> gff
2001-01-16 09:06p 1,239 ListChangeTypes.java
2001-12-05 01:12a <DIR> nativeapps
2001-12-05 01:12a <DIR> seq
2001-12-05 01:12a <DIR> seqviewer
2001-12-05 01:12a <DIR> symbol
1개 파일 1,239 바이트
14 디렉터리 9,885,601,792 바이트 남음
C:\java\sampledir\BioJava\demos>javac .\seq\TestEmbl.java
.\seq\TestEmbl.java:5: package org.biojava.bio does not exist
import org.biojava.bio.*;
^
.\seq\TestEmbl.java:6: package org.biojava.bio.symbol does not exist
import org.biojava.bio.symbol.*;
^
.\seq\TestEmbl.java:7: package org.biojava.bio.seq does not exist
import org.biojava.bio.seq.*;
^
.\seq\TestEmbl.java:8: package org.biojava.bio.seq.io does not exist
import org.biojava.bio.seq.io.*;
^
.\seq\TestEmbl.java:18: cannot resolve symbol
symbol : class SequenceFormat
location: class seq.TestEmbl
SequenceFormat eFormat = new EmblLikeFormat();
^
.\seq\TestEmbl.java:18: cannot resolve symbol
symbol : class EmblLikeFormat
location: class seq.TestEmbl
SequenceFormat eFormat = new EmblLikeFormat();
^
.\seq\TestEmbl.java:21: cannot resolve symbol
symbol : class SequenceBuilderFactory
location: class seq.TestEmbl
SequenceBuilderFactory sFact = new EmblProcessor.Factory(SimpleSequenceBui
lder.FACTORY);
^
.\seq\TestEmbl.java:21: package EmblProcessor does not exist
SequenceBuilderFactory sFact = new EmblProcessor.Factory(SimpleSequenceBui
lder.FACTORY);
^
.\seq\TestEmbl.java:21: cannot resolve symbol
symbol : variable SimpleSequenceBuilder
location: class seq.TestEmbl
SequenceBuilderFactory sFact = new EmblProcessor.Factory(SimpleSequenceBui
lder.FACTORY);
^
.\seq\TestEmbl.java:22: cannot resolve symbol
symbol : class Alphabet
location: class seq.TestEmbl
Alphabet alpha = DNATools.getDNA();
^
.\seq\TestEmbl.java:22: cannot resolve symbol
symbol : variable DNATools
location: class seq.TestEmbl
Alphabet alpha = DNATools.getDNA();
^
.\seq\TestEmbl.java:23: cannot resolve symbol
symbol : class SymbolParser
location: class seq.TestEmbl
SymbolParser rParser = alpha.getParser("token");
^
.\seq\TestEmbl.java:24: cannot resolve symbol
symbol : class SequenceIterator
location: class seq.TestEmbl
SequenceIterator seqI =
^
.\seq\TestEmbl.java:25: cannot resolve symbol
symbol : class StreamReader
location: class seq.TestEmbl
new StreamReader(eReader, eFormat, rParser, sFact);
^
.\seq\TestEmbl.java:28: cannot resolve symbol
symbol : class Sequence
location: class seq.TestEmbl
Sequence seq = seqI.nextSequence();
^
15 errors
C:\java\sampledir\BioJava\demos>
