Thanks Colin. Cool! Matthew
Colin Hardman wrote: > > Hello, > I've just checked in a new package called > org.biojava.bio.program.blast2html. It's a companion to the > org.biojava.bio.program.sax package allowing you to go from blast-like > output to HTML, through a stream of SAX events. This means it should > scale to very large outputs indeed - though your browser may struggle! > > There are faster ways of creating HTML from such an output, however it's > a nice example of how to write a content handler, plus I've added the > ability to markup the alignment in various ways. It should also work for > all the programs that can be parsed by the Blast-Like parser, though I > haven't tested them all. > > There is a new program in the demos/eventbasedparsing called Blast2HTML > and the <A > >HREF="http://www.biojava.org/tutorials/blastlikeParsingCookBook/index.html";>tutorial</A> > has been updated, including some <A > >HREF="http://www.biojava.org/tutorials/blastlikeParsingCookBook/blastp.html";>example<A> > output. > > Colin > > -- > Bioinformatics & Advanced IS > Cambridge Antibody Technology > The Science Park, Melbourn, Cambridgeshire, UK > http://www.CambridgeAntibody.com/ > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > . > > _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
