On Wed, Dec 19, 2001 at 10:56:51AM -0500, Simon Foote wrote: > There's an error in the AlphabetManager.xml file which will causes the > parsing of Genbank DNA containing the ambiguity symbol "m" to fail. > > The cause is the ambiguity symbol "k" which is mis-identified. It should > read as follows and not as "cytosine adenine". > > <ambiguityMapping char="k"> > <symbolref name="guanine" /> > <symbolref name="thymine" /> > </ambiguityMapping>
Okay, this is now fixed in CVS (usual caveat: might take an hour or so to propogate to the anonymous CVS server). Thanks for spotting this! [I found a table and checked the rest of the mappings just to be sure -- hope it's right now...] Thomas. _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
