Hi, I have some possibly useful but rather ugly code that i used for an upcomming paper in bioinformatics. I would be happy to distribute it to the group or to individuals when I get back from my summer holidays :-)
Mark On Thu, 3 Jan 2002, Thomas Down wrote: > On Thu, Jan 03, 2002 at 02:37:30PM +0100, Bert Coessens wrote: > > Does anyone have an example of some code that can be used to draw > > motiflogo's from a distribution of information content per base? I'm > > trying to use the classes and interfaces from biojava.org, but can't > > figger out how I should program a working implementation. > > Hi... > > There's code in BioJava (since release 1.1) for drawing > `logo' representations of BioJava's Distribution objects, > in the package org.biojava.bio.gui, which I think should > do what you want (Note: you actually need to pass in a > probability distribution -- the information content gets > calculated for you). > > If you download the BioJava source distribution (or check > a copy out from CVS), there's a small example program which > shows how these are used. See demos/dist/TestDistribution.java > > Let me know if you have any trouble with this, > > Thomas. > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Mark Schreiber Ph: 64 3 4797875 Rm 218 email [EMAIL PROTECTED] Department of Biochemistry University of Otago PO Box 56 Dunedin New Zealand ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
