Hi, It works now! I set the stack size value on hotspot-virtual machine greater, and it goes through. I noticed that the stack of the parser goes very big when parsing. I don't know if it's true but I suspect that the endElement-method of my contenthandler is not executed every time it should. So I have to check out if I have the newest versions of biojava-components and the right version of Blast that suits with BlastLikeSAXParser. Thanks for the help.
-Pete- On Tue, 8 Jan 2002, Simon Brocklehurst wrote: > Petri Pehkonen wrote: > > > Hi, > > > > I'm using Java SDK Standard Edition 1.3.1 under Windows 2000. I tried to > > change the virtual machine to "classic" but it didn't help and I got the > > same error message. I wonder if anyone has made parsing with result files > > as big as ours? > > Hi, > > I just tried the following test. > > Run the application TutorialEx1 in the demos directory using an input file of > around 28 MB in size (I created this cat-ing together 3 copies of the c. 9 MB > file - Massive.out - in the demos/files/ncbiblast directory of the biojava > distribution). > > I ran the program under J2SE 1.3.1_01, running under Solaris 8. > > Everything seemed to work fine. > > Should be trivial for someone who uses Win2K for their development environment to > try this test. > > S. > -- > Simon M. Brocklehurst, Ph.D. > Head of Bioinformatics & Advanced IS > Cambridge Antibody Technology > The Science Park, Melbourn, Cambridgeshire, UK > http://www.CambridgeAntibody.com/ > mailto:[EMAIL PROTECTED] > > _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
