On Thu, Jan 17, 2002 at 09:49:09PM +0000, Matthew Pocock wrote: > > This issue of overlapping features on sub-sequences was one of my > gripes, so it's nice to see it resolved. I too would be interested to > know if anybody relies on the old behavior in any programs. As for child > features, my gut says you should project them if they are wholely > contained, project them as RemoteFeatures if they overlap the boundary > and, of course, discard them if they fall outside the sub-sequence. This > should be reasonably easy to implement as the rules for what to do work > recursively. Also, it preserves the maximum amount of 'reasonable' > information. If there are no objections, I'd realy like to see this > before 1.2 is released.
Right, this is all now done (and checked in). I've added a couple of extra test methods to SubSequenceTest.java which cover the new behaviour. Thomas. _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l