I've been messing with the BioSQL implementation and have found a couple of bugs. Both are the result of the term_name in the ontology_term table being a fixed length char (255).
1) The feature.byType() method gives the 255 char string, thus if you want to filter by, for example "cds", it fails unless you put a trim() on the string, but no sure where this needs to go for the filter. 2) Same thing happens with keys for the getAnnotation().getProperty() method. I hope that makes sense. As for populating the database, it works great. I've dumped a couple of bacterial genome genbank files into it without any troubles. Cheers, Simon Foote -- Bioinformatics Specialist Institute for Biological Sciences National Research Council of Canada [T] 613-991-4342 [F] 613-952-9092 _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
