I have donwnloaded the three files biojava-1.21jar, bytecode-0.90.jar and xerces.ar on my windows2000 machine. I put them in the directory c:\biojava. I set up the class path CLASSPATH=C:\biojava.jar;C:\xerces.jar;C:\bytecode.jar;.using control panel , system, user variables.
when I compile a demo progra GCContent.java , I get compile err,
biojava/GCContent.java [3:1] package org.biojava.bio.seq does not exist
import org.biojava.bio.seq.*;
^
biojava/GCContent.java [4:1] package org.biojava.bio.seq.io does not exist
import org.biojava.bio.seq.io.*;
^
biojava/GCContent.java [18:1] cannot resolve symbol
symbol : class SequenceIterator
location: class GCContent
SequenceIterator stream = SeqIOTools.readFastaDNA(br);
^
biojava/GCContent.java [18:1] cannot resolve symbol
symbol : variable SeqIOTools
location: class GCContent
SequenceIterator stream = SeqIOTools.readFastaDNA(br);
^
biojava/GCContent.java [23:1] cannot resolve symbol
symbol : class Sequence
location: class GCContent
Sequence seq = stream.nextSequence();
^
biojava/GCContent.java [26:1] cannot resolve symbol
symbol : class Symbol
location: class GCContent
Symbol sym = seq.symbolAt(pos);
^
biojava/GCContent.java [27:1] cannot resolve symbol
symbol : variable DNATools
location: class GCContent
if (sym == DNATools.g() || sym == DNATools.c())
^
biojava/GCContent.java [27:1] cannot resolve symbol
symbol : variable DNATools
location: class GCContent
if (sym == DNATools.g() || sym == DNATools.c())
^
9 errors
Errors compiling GCContent.
I would like to get some help to solve the problem. I am newcomer in java
Room 546 Gunn Building(B19)
Centre for Advanced Technologies in Animal Genetics and Reproduction (Reprogen)
School of Veterinary Science
University of Sydney
Sydney NSW 2006
Phone 61 2 9351 3154
Fax 61 2 9351 2114
email: [EMAIL PROTECTED]
http://www.usyd.edu.au/vetfac/reprogen/
xerces
