Hi
How do I create a SymbolList of the symbol set: {A, B, C, D, E, F} (ordered)?
The following program produces a ClassCastException when run:
import org.biojava.bio.symbol.*;
import java.util.*;
public class TestSuffixTree {
public static void main (String[] args) {
SimpleAlphabet sa = getAlphabet ();
DummySymbolList dsl = new DummySymbolList (sa, 6);
SuffixTree st = new SuffixTree (sa);
st.addSymbols (dsl, 1);
}
public static SimpleAlphabet getAlphabet () {
HashSet hs = new HashSet ();
hs.add (new String("A"));
hs.add (new String("B"));
hs.add (new String("C"));
hs.add (new String("D"));
hs.add (new String("E"));
hs.add (new String("F"));
return new SimpleAlphabet (hs, "alpha");
}
}
thanks.
--st.
}
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