I got the Mass Values from a Micromass cheat sheet that I have had with me for years.
I found a URL that seems to match it at. It looks like they scanned the card. http://www.micromass.co.uk/resources/reference_tables/refp1s1.asp Which is under the reference section of there site. http://www.micromass.co.uk/frameset.asp?header=resources/header.htm&row= 43&main=resources/reference_tables/ Let us know how the tests go. >-----Original Message----- >From: Keith James [mailto:[EMAIL PROTECTED]] >Sent: Monday, April 29, 2002 7:55 AM >To: BioJava List >Subject: [Biojava-l] MassCalc / Isoelectric tests > > > >There are no unit tests for these. We're probably going to use >the isoelectric point class here so I've started writing some for both. > >Question: Can anyone give me a reference for the avg/mono >weights used in the SymbolProperties table? > >I was comparing with EMBOSS pepstats (which appears to be >using avg in their data file) and find different values for >each aa. End result is that we're not getting the same results >as pepstats. I'm not bothered by this as long as we know it's >being calculated correctly from the starting data (and we >should reference that data for folks who use the class). > >BTW, I'm using 10 entries in Swissprot as an arbitrary test >set (Accession P00001 - P00010). > >Keith > >-- > >-= Keith James - [EMAIL PROTECTED] - >http://www.sanger.ac.uk/Users/kdj =- Pathogen >Sequencing Unit, >Wellcome Trust Sanger Institute, Cambridge, UK >_______________________________________________ >Biojava-l mailing list - [EMAIL PROTECTED] >http://biojava.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
