The problem is probably being caused by the use of the DNA alphabet instead of the RNA alpahbet. Are you getting IllegalSymbolExceptions?
If this is the case you need to use the RNA alphabet in the GenBank parser this can be found by calling RNATools.getRNA(); - Mark > -----Original Message----- > From: Alexander Churbanov [mailto:[EMAIL PROTECTED]] > Sent: Thursday, 16 May 2002 1:56 p.m. > To: [EMAIL PROTECTED] > Subject: [Biojava-l] parsing mRNA GenBank flat file > > > Hello, > > I am trying to parse mRNA file from Gen Bank using > your demo program (That parses DNA GenBank flat file). > It crashes on the halfway or at the beginning. Do you > have any suggestions, other methods, demo programs or > other sources showing how to do it. > Thanks in advance, > > Alexander Tchourbanov > > __________________________________________________ > Do You Yahoo!? > LAUNCH - Your Yahoo! Music Experience > http://launch.yahoo.com > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
