Hello everybody,
I was recently writing about inconsistency in
FastaFormat class, I send the updated version of the
function which works as intended.
public void writeSequence(Sequence seq, String
format, PrintStream os)
throws IOException
{
String requestedFormat = new String(format);
boolean found = false;
String [] formats = (String [])
getFormats().toArray(new String[0]);
for(int i = 0; i < formats.length; i++) {
found = found ||
(formats[i].compareTo(format) == 0);
}
if (! found)
throw new IOException("Failed to write: an
invalid file format '"
+ format
+ "' was requested");
writeSequence(seq, os);
}
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