> > > >I have a simple silly question: Is there any reason that the dna tokens as >specified in AlphabetManager.xml are lowercase rather than uppercase? All >of the sources we see use uppercase by default. > > Have you tried replacing the lower case letters with upper case in the AlphabetManager.xml? I don't see why this would cause a problem.
>This can be easily worked around, but not without a cost in terms of string >generation and memory usage. > How so? What do you mean by "string generation"? _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
