if you wanted example code and can read Perl code see Bio::Tools::RestrictionEnzyme - see the docs at http://docs.bioperl.org for the module code and methods.
We also use it as part of Bio::Tools::Gel to produce product sizes - virtual gel pictures are just around the corner ;) Cheers, Jason On Wed, 19 Jun 2002, Schreiber, Mark wrote: > Hi - > > I don't believe that there is, although conceivably one wouldn't be hard > to make and would probably be quite useful. Anyone interested in making > one could probably take a lead from the proteomics package and the > protease digestion classes. Any takers? > > - Mark > > > -----Original Message----- > > From: Ryan Cuprak [mailto:[EMAIL PROTECTED]] > > Sent: Wednesday, 19 June 2002 1:41 a.m. > > To: [EMAIL PROTECTED] > > Subject: [Biojava-l] Restriction Enzyme Support > > > > > > > > Hello, > > I was just curious if there are any tools in biojava package > > that given a restriction enzyme (sequence on which it cuts) > > will dice up a DNA symbol list and return the resulting fragments? > > > > Thanks, > > Ryan Cuprak > > > > > > > > _______________________________________________ > > Biojava-l mailing list - [EMAIL PROTECTED] > > http://biojava.org/mailman/listinfo/biojava-l > > > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > -- Jason Stajich Duke University jason at cgt.mc.duke.edu _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
