What I am trying to do is go along the sequence and look at each feature in turn, so I can collect/compare data for features next to each other
The problem is that I have >10000 features and the only way I can find the next feature is by using a filter on all the features together The features held in a FeatureHolder are stored in a List (which isnt sorted by position) so I can not easily get the next in sequence order. I could implement my own Sequence class which stores features in order - but I am using an EMBL file to create the Sequence (as I want the data from there too!) You can not specify which Sequence Implementation the method SeqIOTools.readEmbl(br) should use. My only other way would be to implement a new type of LinkedListNodeFeature with the methods Feature getNextFeature() Feature getPreviousFeature() but that just seems ugly ? _________________________________________________________________ Chat with friends online, try MSN Messenger: http://messenger.msn.com _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
