>>>>> "Petri" == Petri Pehkonen <[EMAIL PROTECTED]> writes:
Petri> Hi, Does there exist any parser that can parse SOFT-files
Petri> of NCBI's Gene Expression Omnibus database?
Not exactly. However if you are a Java developer there is a toolkit
for quickly creating parsers for tag-value file formats like SOFT. See
the org.biojava.bio.program.tagvalue package.
I wanted a parser for REBASE (format #31) files which have a similar
structure. See org.biojava.bio.molbio.RestrictionEnzymeManager for an
implementation using the tagvalue package (in development CVS HEAD).
Petri> I would be also interested in parser for Medline-abstract
Petri> files.
Sorry, I can't help with this one.
Keith
--
-= Keith James - [EMAIL PROTECTED] - http://www.sanger.ac.uk/Users/kdj =-
Pathogen Sequencing Unit, Wellcome Trust Sanger Institute, Cambridge, UK
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