>Would this method return an iterator over each sequence in the >alignment? Sounds usefull to me. I have always taken an iterator over >the labels and fetched each sequence from the alignment by each of these >labels. Yeah, it's meant to simplify that process. It would return an instance of a biojava SequenceIterator.
>One issue - alignments are defined as being over symbol lists, not >sequences. Does this break things? I was planning on creating instances of SimpleSequences, with the label as the name and urn. I don't think any other properties are strictly necessary. Since Sequence extends SymbolList, all of the methods that should be called will be available. Nimesh _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
