Said omnigene code is at
> >http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/omnigene/omnigene/edu/mit/wi/omnigene/webservice/LSID.java > >http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/omnigene/omnigene/edu/mit/wi/omnigene/webservice/MalformedLSIDException.java michael On Mon, 22 Jul 2002, Michael L. Heuer wrote: > > Hello Matthew, > > It's probably best to wait a bit before importing this into biojava > proper. Things are still a little bit up in the air here on the list(s), > and I believe there is a LSID implementation in the omnigene codebase > that we should take a look at before committing to any one design. > > I like the idea of removing the accessors from the Identifiable interface, > but would advocate leaving them in the abstract and support implementations. > > michael > > > On Fri, 19 Jul 2002, Matthew Pocock wrote: > > > Great Michael, > > > > LifeScienceIdentifier looks good. I'd prefer Identifiable to drop all > > methods except getPreferredIdentifier() and getIdentifiers(). I think > > the other methods duplicate already available information (e.g. > > getAuthority etc can be found by calling > > getPreferredIdentifier().getAuthority() ). Putting functionality/api in > > exactly one place is generaly a good idea. What are your thoughts? > > > > What package would you like to put these classes/interfaces into? An > > existing package, or org.biojava.bio.lsid or org.biojava.bio.program.lsid? > > > > Matthew > > > > Michael L. Heuer wrote: > > > Having spent too much time in meetings lately, I felt the need to > > > actually code something, and whipped up a java implementation of LSIDs > > > based on the discussion here. Being that this has been a moving target, I > > > may not have nailed it exactly right -- I went with containment and the > > > idea of a "preferred identifier", eg. > > > > > > interface LifeScienceIdentifier extends Immutable { > > > public String getAuthority(); > > > public String getNamespace(); > > > public Object getObjectId(); > > > public Object getVersion(); > > > > > > public String asIdentifier(); // authority:namespace:object_id > > > public String asCommonName(); // namespace:object_id.version > > > } > > > > > > interface Identifiable { > > > // delegate to preferred > > > public String getAuthority(); > > > public String getNamespace(); > > > public Object getObjectId(); > > > public Object getVersion(); > > > > > > public LifeScienceIdentifier getPreferredIdentifier(); > > > public boolean hasMultipleIdentifiers(); > > > public List getIdentifiers(); > > > } > > > > > > A tarball with implementations, factories, junit tests, etc. is available > > > > > > > > >>http://shore.net/~heuermh/lsid-PROPOSAL.tar.gz > > > > > > > > > michael > > > > > > > > > > _______________________________________________ > > Open-Bio-l mailing list > > [EMAIL PROTECTED] > > http://open-bio.org/mailman/listinfo/open-bio-l > > > > _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
