From: Keith James <[EMAIL PROTECTED]>
Date: 31 Jul 2002 10:57:42 +0100
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>>>>> "Neill" == Neill White <[EMAIL PROTECTED]> writes:
Neill> Thanks Robin - I was using the latest (1.21) binary.
Neill> Updating to the current code was a marked improvement. The
Neill> input and output genbank files nearly match. There is a
Neill> slight issue with an accumulation of '/JoinType="join"'
Neill> feature table qualifiers on CDS and mRNA records (i.e., if
Neill> you read in and print out the same genbank record n times,
Neill> you'll get n '/JoinType="join"' qualifiers for each feature
Neill> that has a join. This probably won't break anyone's parser
Neill> though and is more cosmetic than vital.
There is actually a HashMap under a special key
Feature.PROPERTY_DATA_KEY in the GenBnk/EMBL derived feature
Annotation for storing internal data like this (such that it isn't
printed). I guess it's not being used in this case - I'll take a look.
Keith
--
- Keith James <[EMAIL PROTECTED]> bioinformatics programming support -
- Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, UK -
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