Before this goes to bionet.software I thought I'd post here as this little viewer is based entirely on BioJava core libraries. Some people may remember it from the bootcamp. I've had time to enhance it slightly.
--- This is the README file for Gemini INTRODUCTION Gemini is a tool for viewing pairwise DNA-DNA sequence comparison results generated by programs such as Blast and Fasta. It presents a "dotplot" style view where individual Blast HSPs or Fasta hits are represented as diagonal lines. In addition, any annotation available on the sequences may be viewed in context on the axes of the plot. Gemini is written in Java, reads EMBL or Fasta format sequences and NCBI-Blast 2.0.11 and 2.2.3 or WU-Blast 2.0a19mp-washu reports. DOCUMENTATION See the HTML user manual in the docs directory. [...] You can get source and binaries from ftp://ftp.sanger.ac.uk/pub/pathogens/software/gemini/gemini_0.2.tar.gz (in about 1 hour from now, when the FTP site gets synchronized). There's a user manual with screenshots in the tarball. -- - Keith James <[EMAIL PROTECTED]> bioinformatics programming support - - Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, UK - _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
