Hi.

We've been talking gapped symbol lists over on chat - join us - there's 
something going on most days (irc.openprojects.net #biojava). I've 
finaly started to make GappedSymbolList an interface. We'll be adding 
SimpleGappedSymbolList. GappedSequence will be moving to an interface, 
and we'll be adding SimpleGappedSequence. I believe there are some 
gap-aware alignment objects floating arround. We'll get it to the point 
things compile. Then, people that care should check that their bit of 
functionality works.

Thanks and good night,

Matthew

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