Hi, > Each BioSQL database contains multiple namespaces (called > `biodatabases' in BioSQL terminology). The SeqDumper example > dumps all the sequences in a given biodatabase. > > If you've newly set up a PostgreSQL database, it won't contain any > biodatabases. You can easily load some sequences using the > UploadFlat command: > > java -Djdbc.drivers=... biosql.UploadFlat <url> <user> <passwd> mybiodatabase >fasta some_sequence_file.fa > > This creates a new biodatabase and populates it with sequences. > You could then dump these out again using the SeqDumper command > with "mybiodatabase" as the last argument.
I understood the 'biodatabases' and made it to execute the UploadFlat and SeqDumper. Thanks _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
