I've had these questions since I started using Biojava a year ago, and I still can't get it right:
1. How can I take a certain part of an annotated sequence (let's say from bp 500 to 750), make a new sequence from this part, while retaining all annotations of the piece, in new coordinates? So a feature on the original sequence from 600 to 610 has to be the same feature with its annotation, on the subsequence from 100-110. 2. If I'm using DNA sequences, and if I need the strand of my features, then I get Exceptions when a certain feature is not stranded. So in the first case I need a StrandedFeature, in the second a Feature, but that puzzles me. Any ideas or examples? Thank you! Stein Aerts. _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
