Thanks. I was using the following version: http://biojava.org/download/source/biojava-1.22.tar.gz
John On Sun, 29 Sep 2002, Thomas Down wrote: > On Sun, Sep 29, 2002 at 10:16:15AM -0400, John Ling wrote: > > I was able to run the tutorial version properly only after I additionally > > added the jakarta-regexp.jar to the classpath. > > > > The only real difference I can see between the demo versions is that the > > tutorial version uses SeqIOTools.readFastaDNA(br). > > > > What is jakarta-regexp.jar used for and why does SeqIOTools.readFastaDNA > > rely on it? I thought jakarta-regexp.jar was only used for ANT during the > > package building process. > > Are you using a CVS version or snapshot of BioJava? Recent versions > include some `format guessing' code in SeqIOTools, which relies on > the regexp library. This dependancy wasn't there in 1.2 (unless some > 1.3-only code managed to creep onto the 1.2 branch). > > > If it is required to include jakarta-regexp.jar in the classpath, then > > perhaps this requirement could be documented in "Getting started" section > > of the documentation. > > Added this now. > > Thomas. > _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
