Thanks for the help; the problem was that I was instantiating my RNA sequence as an implementing class type rather than the interface type and trying to retrieve the transcribed sequence into the class object. It definitely helps to know that the new sequence is a view and not a separate object, so the instantiating isn't even required.
I am now working off of the 1.2.2 release instead of the CVS 'snapshot'. I'm sure I'll have more stupid questions in the future, but, I'll limit them as best I can. Thanks for the quick response! Dave _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
