Hi all,
I see from the mailing list archive that there was mention of someone
creating a GCG format for BioJava. Did this happen? Is it necessary? I'm
interested in seeing how to convert from one format to another a bit like I
could with this bioperl script. Is something like this possible. I can see
how to use Embl, Genbank and Fasta but not GCG.
TIA for any pointers.
use Bio::SeqIO;
my $in = Bio::SeqIO->new(-file => "$ARGV[0]" , '-format' => 'Fasta');
# number for files
my $i=1;
while ( my $seq = $in->next_seq() ) {
my $out = Bio::SeqIO->new(-file => ">$i.seq" , '-format' => 'gcg');
$out->write_seq($seq);
$i++;
}
Cheers, Andrew.
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