Hello Folks,
I'm looking for a local alignment script that uses a variant of the
Smith-Waterman algorithm where, in addition to the highest scoring
alignment, all other alignments above a given score cut off are returned.
Two such programs have already been written in C (LALIGN and SIM), but I
would like to use all native code in my application to preserve the Java
portability. Any suggestions? -cheers, Dave
--
David Austin Nix, PhD
University of California at Berkeley
Lawrence Berkeley National Lab
Mailstop 84-171
One Cyclotron Road
Berkeley, CA 94720-3200
510-486-6791 (lab)
510-786-549-0137 (fax)
[EMAIL PROTECTED]
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