Howdy,
Has anyone tried recently importing all of Swiss Prot, NCBInr, etc. into a biosql database on any RDBMS (postgres, mysql, oracle, etc.)? If so, can you give me (even approximate) performance numbers (for loading, finding a specific sequence entry, iterating over all sequences, etc.) and ultimate database size on disk? I'm trying to determine if using biosql is a viable way of architecting my application (which needs to do things to all sequences and then things to a specific, user chosen sequence).
I've tried loading all of sprot.dat to Postgres using bioperl, but this was a less than raging success (see my recent post to bioperl-l for details). I'll try again with UploadFlat (which I found after I started using bioperl).
Thanks,
-c
-- [ Christopher Mason MPRC Bioinformatics [EMAIL PROTECTED] ] _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
