Hi - This looks odd. It may be that the Genbank produced by VectorNTI is not quite right. Can you post the file, or at least the few lines surrounding the CDS feature?
- Mark -----Original Message----- From: Criscuolo, Fred [mailto:[EMAIL PROTECTED] Sent: Friday, 12 September 2003 4:27 a.m. To: '[EMAIL PROTECTED]' Subject: [Biojava-l] Parse error with negative strand CDS Hi, I am using BioJava 1.3.0 to process a GenBank file that has a CDS on the negative strand. I am using the SeqIOTools.readGenbank(BufferedReader) method to parse the file. I get the following error for any CDS on the negative strand: This line could not be parsed: CDS complement(518..1597) The GenBank files I'm working with are produced by the VectorNTI application. I'm using Java 1.4.2. I've searched the biojava mailing list but have not seen a reference to this particular problem. Any idea what's wrong? Thanks. Fred Fred Criscuolo Research Informatics - Pfizer, Inc. 858.622.7307 LEGAL NOTICE Unless expressly stated otherwise, this message is confidential and may be privileged. It is intended for the addressee(s) only. Access to this E-mail by anyone else is unauthorized. If you are not an addressee, any disclosure or copying of the contents of this E-mail or any action taken (or not taken) in reliance on it is unauthorized and may be unlawful. If you are not an addressee, please inform the sender immediately. _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
