Hi -
The weight matrices and DP examples from
http://www.biojava.org/docs/bj_in_anger/index.htm might be useful.
- Mark
-----Original Message-----
From: Alberto Ambesi [mailto:[EMAIL PROTECTED]
Sent: Tue 16/09/2003 8:37 a.m.
To: [EMAIL PROTECTED]
Cc:
Subject: [Biojava-l] how do you run a similarity search through biojavaclasses?
I need to find the best similarity match of a query sequence against
bigger sequence (say, a chromosome region of 100 kb). what I need as
output is the identity % of the match and the position (start/end).
please any suggestions or sample code are apreciated.
Thank you,
Alberto Ambesi
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