Matthew
Andy Hammer wrote:
As some have suggested, I checked the following: I have the bytecode.jar file as shown -rwxrwxr-x 1 ahammer ahammer 91K Jul 28 08:18 bytecode.jar
My PATH has no old biojava.jar references PATH = .:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/home/ahammer/bin:/usr/java/bin:/usr/ant/bin Also the java/jre/lib/ext directory is devoid of any biojava.jars
I get the errors:
compile-biojava:
[javac] Compiling 1099 source files to
/home/ahammer/downloads/biojava-live/ant-build/classes/biojava
[javac] depend attribute is not supported by the
modern compiler
[javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:9:
package org.biojava.ontology.format.triples.lexer does
not exist
[javac] import
org.biojava.ontology.format.triples.lexer.Lexer;
[javac] ^
[javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:10:
package org.biojava.ontology.format.triples.lexer does
not exist
[javac] import
org.biojava.ontology.format.triples.lexer.LexerException;
[javac] ^
[javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:11:
package org.biojava.ontology.format.triples.parser
does not exist
[javac] import
org.biojava.ontology.format.triples.parser.Parser;
[javac] ^
[javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:12:
package org.biojava.ontology.format.triples.parser
does not exist
. . . many more . . . ending with [javac] /home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:392: cannot resolve symbol [javac] symbol : class ACompoundFullName [javac] location: class org.biojava.ontology.io.TriplesParser.Processor [javac] ACompoundFullName fn = (ACompoundFullName) fullName; [javac] ^ [javac] /home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:392: cannot resolve symbol [javac] symbol : class ACompoundFullName [javac] location: class org.biojava.ontology.io.TriplesParser.Processor [javac] ACompoundFullName fn = (ACompoundFullName) fullName; [javac] ^ [javac] /home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:408: cannot resolve symbol [javac] symbol : class AIntegerLiteralValue [javac] location: class org.biojava.ontology.io.TriplesParser.Processor [javac] if(v instanceof AIntegerLiteralValue) { [javac] ^ [javac] 100 errors
Any suggestions?
Andy
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