Ok; I am having problem with using MassCalc class. It
always an IllegalSymbolException though the symbol
list is correct.
I have written this,
SequenceIterator iter =
MySeqTools.myReadFastaAA(args[0]);
while(iter.hasNext()){
Sequence seq = iter.nextSequence();
SymbolList syml = (SymbolList)seq;
System.out.println(syml.seqString());
MassCalc mCalc = new
MassCalc(SymbolPropertyTable.MONO_MASS, true);
double mass = mCalc.getMass(syml);
System.out.println("Mass:
"+seq.getName()+"\t"+mass);
}
while result in error
Exception in thread "main"
org.biojava.bio.symbol.IllegalSymbolException: The
SymbolList was not using the protein alphabet
Any one can help me with this,
Thanks,
Suman K
=====
Suman K
BioInformatics Associate,
Genomics Research,
Newton Lab,
University of Missouri - Columbia.
__________________________________
Do you Yahoo!?
Free Pop-Up Blocker - Get it now
http://companion.yahoo.com/
_______________________________________________
Biojava-l mailing list - [EMAIL PROTECTED]
http://biojava.org/mailman/listinfo/biojava-l
