> The DP code does some caching of probabilities, I don't think there's > any way to turn this off without modifying the DP implementations. > > Thomas.
My reccolection is that if you did turn this off, the algorithm would run very, very much more slowly. Internally to the DP objects, the distribution probabilities (in fact, they aren't even probabilities by this stage) are stored in a data-structure optimized for the type of lookups performed during the dynamic programming recursions. Matthew _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
