Sun One Studio is built on NetBeans, which is what I use to develop bits of BioJava with, so I think what works for me should work for you. Here goes...:
If you are working with BioJava in apps you are developing yourself, you need to set up BioJava as a library in NetBeans. Do this by going to the Library Manager (Tools menu), creating a new library called BioJava, then using the buttons provided to locate and add the biojava-1.4.jar file to the library. You can then associate this library with any project you are working on by right-clicking on that project, choosing Properties, then click on Libraries in the tree on the left of the window that appears and use this to add the BioJava library. If you are intending to develop BioJava itself, you need to check out the entire biojava-live project from CVS. You can then set up development in NetBeans by creating a "new project from existing Ant script", and telling it where the build.xml file can be found within the BioJava project. It'll do the rest for you. Hope this helps. cheers, Richard On Thu, 2006-04-27 at 14:48 +0100, Nathan S. Haigh wrote: > I’m totally new to Java and Biojava as I'm trying to defect from Bioperl! > I'm trying to use Sun One Studio for editing my java files - at least > initially. I don't know how to setup Sun One Studio to find my > biojava-1.4.jar file, I'm not even sure how to test if it can find it > correctly. Any help on these issues would be gratefully received. As I said > I'm a newbie - bear with me! > > Cheers > Nathan > > ---------------------------------------------------------------------------- > ------ > Dr. Nathan S. Haigh > Bioinformatics PostDoctoral Research Associate > > Room B2 211 Tel: +44 (0)114 22 > 20112 > Department of Animal and Plant Sciences Mob: +44 (0)7742 533 > 569 > University of Sheffield Fax: +44 (0)114 22 > 20002 > Western Bank Web: > www.bioinf.shef.ac.uk > Sheffield > www.petraea.shef.ac.uk > S10 2TN > ---------------------------------------------------------------------------- > ------ > > --- > avast! Antivirus: Outbound message clean. > Virus Database (VPS): 0615-2, 12/04/2006 > Tested on: 27/04/2006 14:48:56 > avast! - copyright (c) 1988-2006 ALWIL Software. > http://www.avast.com > > > > > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland (BioMart Team) EMBL-EBI Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UNITED KINGDOM Tel: +44-(0)1223-494416 _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
