Nathan S. Haigh wrote: >I was wondering if there were any methods for generating a consensus >sequence for alignments? Or any suggestions for calculating the frequency of >symbols at each position in an alignment. > >I had a look at the DistributionTools after seeing a past e-mail to the list >but couldn’t figure if this would do the job as I’m new to Java. > > > I'm also new to Java and Biojava, BTW I have found very useful in the past to do these kind of things using the Bio::SimpleAlign module in Bioperl
HTH Remo >Thanks >Nath > >---------------------------------------------------------------------------- >------ >Dr. Nathan S. Haigh >Bioinformatics PostDoctoral Research Associate > >Room B2 211 Tel: +44 (0)114 22 >20112 >Department of Animal and Plant Sciences Mob: +44 (0)7742 533 >569 >University of Sheffield Fax: +44 (0)114 22 >20002 >Western Bank Web: >www.bioinf.shef.ac.uk >Sheffield > www.petraea.shef.ac.uk >S10 2TN >---------------------------------------------------------------------------- >------ > > > >--- >avast! Antivirus: Outbound message clean. >Virus Database (VPS): 0620-2, 18/05/2006 >Tested on: 18/05/2006 16:44:01 >avast! - copyright (c) 1988-2006 ALWIL Software. >http://www.avast.com > > > >_______________________________________________ >Biojava-l mailing list - [email protected] >http://lists.open-bio.org/mailman/listinfo/biojava-l > > > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
