I am a newbie to biojava so sorry if questions are too simple! I am trying to use Biojava's blast xml parsing following the cookbook from biojava's web.
So far I managed to parse correctly the xml output from blast getting the SeqSimilaritySearchResult object and then the SeqSimilaritySearchHit and SeqSimilaritySearchSubHit. From those I could get bit scores, a SimpleAlignment object, sequences as SymbolList objects and all kinds of things. My question is how to get the percentage identity as well as all of those. That must be obvious but I've been looking around and couldn't find how. Any pointers appreciated Thanks Jose ---- Jose M. Duarte Max Planck Institute for Molecular Genetics Ihnestr. 63-73 14195 Berlin Germany _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
