Are you sure the BioJava classes/jar files are on your classpath whilst
compiling? The constructor it mentions definitely exists so this is the
only thing I can think of that might be wrong.
cheers,
Richard
PS. Also make sure you're using the latest (1.4) release, or the latest
code from CVS.
On Mon, 2006-06-26 at 17:18 +0200, David Bourgais wrote:
> Hello
>
> I would like to implement the Blast2HTML class.
> But this method failed suring compilation :
>
> public HTMLRenderer configureBlastN( PrintWriter poOut ) {
>
> SimpleAlignmentStyler oStyler = new SimpleAlignmentStyler
> ( SimpleAlignmentStyler.SHOW_ALL );
> String oRed = "FFA2A2";
> oStyler.addStyle( "-", oRed );
> oStyler.addStyle( "N", oRed );
> oStyler.addStyle( "A", oRed );
> oStyler.addStyle( "T", oRed );
> oStyler.addStyle( "C", oRed );
> oStyler.addStyle( "G", oRed );
>
> AlignmentMarker oAlignmentMarker = new AlignmentMarker
> ( new ColourCommand() {
> public boolean isColoured
> ( String poFirst, String poSecond ) {
>
> if ( poFirst.equals( poSecond ) ) {
> return false;
> } else {
> return true;
> }
> }
> } // end ColourCommand
> , oStyler
> );
>
> Properties oProps = new Properties();
> oProps.put( "db", "nucl" );
>
> DefaultURLGeneratorFactory durlgf = new
> DefaultURLGeneratorFactory();
>
> HTMLRenderer oRenderer = new HTMLRenderer(poOut,
> this.oStyleDefinition,
> 50,
> durlgf,
> oAlignmentMarker,
> oProps);
>
> return oRenderer;
> }
>
> My compiler told me :
> The constructor HTMLRenderer(PrintWriter, String, int,
> DefaultURLGeneratorFactory, AlignmentMarker, Properties) is undefined
>
> How can I solve this problem.
>
> Thank you very much for answer.
>
> Regards.
>
> David Bourgais
>
>
> _______________________________________________
> Biojava-l mailing list - [email protected]
> http://lists.open-bio.org/mailman/listinfo/biojava-l
--
Richard Holland (BioMart Team)
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
UNITED KINGDOM
Tel: +44-(0)1223-494416
_______________________________________________
Biojava-l mailing list - [email protected]
http://lists.open-bio.org/mailman/listinfo/biojava-l
