The method would be useful but Alignment is an interface so you can't add
it there.
Typically in biojava we use a Tools class that contains static methods to
do common things. For example DNATools, DistributionTools,
RichSequence.IOTools. As you can see the last case is an inner class of
the RichSequence interface. This is probably a tidier approach.
- Mark
Dexter Riley <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
07/05/2006 12:46 AM
To: [email protected]
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: Re: [Biojava-l] Getting a Slice of an Alignment
I will give this a try. If this provides the "alignment slice"
functionality
we discussed, I think a function to perform this would be a useful
addition
to the API (either of Alignment or of the appropriate utility class).
Thanks,
Ed
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