Hi Kikia, Have you tried the latest version of the chromatogram parser code from CVS. It didn't make it into the 1.4 release of biojava which is why you may be having a problem. If not then I guess it is a proper bug. The src can be accessed @
http://code.open-bio.org/cgi/viewcvs.cgi/biojava-live/src/org/biojava/bio/program/scf/SCF.java?cvsroot=biojava Cheers, Andy Yates Kikia Carter wrote: > I am having the following problem when trying to create a chromatogram > from an SCF file: > java.lang.IndexOutOfBoundsException > at java.io.FileInputStream.readBytes(Native Method) > at java.io.FileInputStream.read(FileInputStream.java:194) > at java.io.DataInputStream.read(DataInputStream.java:224) > at org.biojava.bio.program.scf.SCF$Parser.parsePrivate(SCF.java:348) > at org.biojava.bio.program.scf.SCF$Parser.parse(SCF.java:313) > at org.biojava.bio.program.scf.SCF$ParserFactory.parse(SCF.java:176) > at org.biojava.bio.program.scf.SCF.load(SCF.java:122) > at org.biojava.bio.program.scf.SCF.load(SCF.java:117) > at org.biojava.bio.program.scf.SCF.create(SCF.java:104) > at > org.biojava.bio.chromatogram.ChromatogramFactory.create(ChromatogramFactory.java:75) > > > > Can anyone offer advice on this problem? Thanks in advance! > > _________________________________________________________________ > FREE pop-up blocking with the new MSN Toolbar – get it now! > http://toolbar.msn.click-url.com/go/onm00200415ave/direct/01/ > > > ------------------------------------------------------------------------ > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
