Hi - This is a bug that has been submitted to bugzilla. Strangely it was not an issue in the pre-releases of biojava. I was kind of hoping someone else would fix it but I guess I will have to find time to take a look.
- Mark On 8/28/07, Daniel Rohrbach <[EMAIL PROTECTED]> wrote: > Hi all, > > i'm trying to run the "How do I make a ProfileHMM" example but it doesn't > want to work. I copied the code to my program and when I start it I get the > following exceptions: > > Exception in thread "main" java.lang.IndexOutOfBoundsException: Can't find > symbol for index 0 > at > org.biojava.bio.symbol.LinearAlphabetIndex.symbolForIndex(LinearAlphabetIndex.java:106) > at > org.biojava.bio.dist.SimpleDistribution$Trainer.trainImpl(SimpleDistribution.java:332) > at > org.biojava.bio.dist.SimpleDistribution$Trainer.train(SimpleDistribution.java:306) > at > org.biojava.bio.dist.SimpleDistributionTrainerContext.train(SimpleDistributionTrainerContext.java:126) > at biojavatests.HMMTest.main(HMMTest.java:71) > > The error occurs at mt.train(). It seems that there was no, wrong or empty > alphabet set for the trainer that shall be used. > > here the link to the examplepage: > http://biojava.org/wiki/BioJava:CookBook:DP:HMM > any help on this topic? > > Thanks in advance > __________________________________________________________________________ > Erweitern Sie FreeMail zu einem noch leistungsstärkeren E-Mail-Postfach! > Mehr Infos unter http://produkte.web.de/club/?mc=021131 > > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
