Dear List, I am trying to use BioJava-1.5 from Matlab (7.2), in order to retrieve the raw chromatogram data from some .AB1 files. I have added biojava-1.5.jar to the Matlab java class path. I then import the following classes. import java.io.*; import java.util.*; import org.biojava.bio.*; import org.biojava.bio.chromatogram.*; import org.biojava.bio.program.abi.*; import org.biojava.bio.seq.*; import org.biojava.bio.seq.impl.*; import org.biojava.bio.seq.io.*; import org.biojava.bio.symbol.*;
Next I read the raw chromatogram file with myTrace = ChromatogramFactory.create(myFile); Then I try to retrieve the raw data for the a base using raw_a = myTrace.getTrace(DNATools.a()); This works fine for a, t and g bases. My problem is when I call DNATools.c() it returns the following error ??? No method 'c' with matching signature found for class 'org.biojava.bio.seq.DNATools' Can anyone diagnose what is wrong and why only the .c method is giving an error? I can get around this by using DNATools.complement(G) but I would prefer to understand what is going on and get things working properly. Best regards, Andrew Craig ____________________________________________________________________ This email is confidential and privileged.If you are not the intended recipient pleaseaccept our apologies; please do not disclose, copy, or distribute information in this email nor take any action in reliance on its contents: to do so is strictly prohibited and may be unlawful. Please inform us that this message has gone astray before deleting it. Thank you for your co-operation. Andrew Craig [EMAIL PROTECTED] BlueGnome Limited http://www.cambridgebluegnome.com Breaks House Mill Court Great Shelford Cambridge CB2 5LD Tel: 01223 844441 Fax: 01223 844445 US: 1 800 418 9656 ____________________________________________________________________ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
