Hi!
I have just started to learn biojava. I have written a small
program that write a sequence in fasta file with the help of the biojavax method
RichSequence.IOTools.writeFasta(seqOut, s1, ns);
I have got the error "cannot find symbol".
I'm using biojava 1.5, jdk 1.6 and netbeans.
What can be done to fix this problem?
This is what I tried:
import org.biojava.bio.seq.*;
import java.io.*;
import org.biojava.bio.symbol.SymbolList;
import org.biojavax.RichObjectFactory;
import javax.xml.stream.events.Namespace;
import org.biojavax.bio.seq.RichSequence;
public class SeqFastaF {
public static void main(String[] args) {
SymbolList dna0 =
DNATools.createDNASequence("atgctgaacaacggcatggcaacttacggacggactacgact",
"dna_1");
Sequence s1 = DNATools.createDNASequence(dna0.seqString(), "dna_0");
try {
OutputStream seqOut = System.out;
Namespace ns = (Namespace) RichObjectFactory.getDefaultNamespace();
RichSequence.IOTools.writeFasta(seqOut,s1,ns);
} catch (IOException ex) {
//io error
ex.printStackTrace();
}
}
}
Error:
cannot find symbol
symbol : method
writeFasta(java.io.OutputStream,org.biojava.bio.seq.Sequence,javax.xml.stream.events.Namespace)
location: class org.biojavax.bio.seq.RichSequence.IOTools
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