Hi,
I am receiving the following error when I use BlastParser code from the
cookbook <http://www.biojava.org/wiki/BioJava:CookBook:Blast:Parser> :
org.xml.sax.SAXException: Could not recognise the format of this file as one
supported by the framework.
at org.biojava.bio.program.sax.BlastLikeSAXParser.parse(
BlastLikeSAXParser.java:182)
at org.arabidopsis.test.BlastParser.main(BlastParser.java:44)
I have generated the xml file using this command:
blast-2.2.17/bin/blastall -p blastp -d brAll -i tester -b 300 -m 7 >
tempresult.xml
Then pass it to BlastParser:
BlastParser tempresult.xml
Thanks for your help in advance,
--
Best regards,
Ozgur (Oscar) Ozturk,
http://www.cse.ohio-state.edu/~ozturk/
Mobile Phone: (614) 805-4370
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