-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 There is a class currently only available from the head of CVS - ie. it is unreleased yet. To get it you'll need to check out the very latest BioJava source code from CVS.
The JavaDoc for the class is here: http://www.spice-3d.org/public-files/javadoc/biojava/org/biojavax/bio/phylo/ParsimonyTreeMethod.html It is designed to take input in the form of blocks of data similar to what you would find in a Nexus file (the Nexus file parsers elsewhere in the org/biojavax/bio/phylo package will provide these). However you could of course create such objects from your own data without needing to read/write any Nexus files. cheers, Richard Shirley Cohen wrote: > Hi BioJava People, > > I'm looking for existing code that implements a maximum parsimony > search in Java. Does BioJava have this functionality? If so, can you > point me to the appropriate classes? > > Thanks, > > Shirley > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.2.2 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFHOrbW4C5LeMEKA/QRAuswAJ9olIwj7DGszOnKORU255YS3m2ohACfbKTw ihjuQVv0j+nlXb+4SL5pIfw= =ldfM -----END PGP SIGNATURE----- _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
