Hi Brendan, SSBOND lines are currently not parsed. If this is what you need, I can add this over the next couple of days.
If you want to compute the bonds yourself, the framework can e.g. calculate distances between the sulphur atoms for you. - Andreas On 14 Nov 2007, at 00:48, Brendan Duggan wrote: > Greetings > > I'm trying to mine some information on disulfides in > the PDB and was hoping there might be a way of > obtaining this information with the BioJava PDB > parser. However, I haven't been able to see anything > like this mentioned in the API docs. If it is > currently not possible to extract disulfide > information from PDB files are there any plans to > implement this? > > Thanks! > > Brendan > > > Make the switch to the world's best email. Get the new Yahoo! > 7 Mail now. http://au.yahoo.com/worldsbestmail/viagra/index.html > > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l ----------------------------------------------------------------------- Andreas Prlic Wellcome Trust Sanger Institute Hinxton, Cambridge CB10 1SA, UK +44 (0) 1223 49 6891 ----------------------------------------------------------------------- -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
