Hello Andy Thank you very much for your answer. But, even if I have a ABIFChromatogram object and a ChromatogramGraphic object, I do not understand what you said about setting options. I see a class Chromatogramgraphic.Option, but I do not know what can I do with this.
Thank you very much for your help. Best regards. > Yup Russ is on the ball with that one 100% :) > > A chromatogram is really a graph of 4 tracks where each scan index > refers to an intensity of the 4 dyes used in Sanger Sequencing. There > is no direct relation to the size of a chromatogram and the number of > base pairs it will represent. If you require any changes to the > rendering the options are controlled by ChromatogramGraphic.Option > instances in conjunction with the setOption() method in > ChromatogramGraphic. > > If you are rendering a processed ABI file and just want to see the > base called sequences then the best option is to use the > Chromatogram's getBaseCalls() method & look up the start & finish of > the base calls. Use this to set where you want rendering to start & > stop (again another ChromatogramGraphic.Option). > > Hope this helps, > > Andy -- David Bourgais Bioinformatician BioXpr SA/NV http://www.bioxpr.com Rue du Seminaire, 22 5000, Namur, Belgium Phone: +32(0)81 72 51 58 _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
